IL_5KPW_156

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_156 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.187

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5KPW|1|27|A|2459
5KPW|1|27|U|2460
5KPW|1|27|A|2461
*
5KPW|1|27|U|2489
5KPW|1|27|G|2490
5KPW|1|27|U|2491
5KPW|1|27|U|2492
5KPW|1|27|U|2493

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16