IL_5KPW_168

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_168 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1047

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KPW|1|27|G|2737
5KPW|1|27|A|2738
5KPW|1|27|U|2739
5KPW|1|27|A|2740
5KPW|1|27|A|2741
5KPW|1|27|G|2742
*
5KPW|1|27|C|2762
5KPW|1|27|G|2763
5KPW|1|27|A|2764
5KPW|1|27|A|2765
5KPW|1|27|A|2766
5KPW|1|27|C|2767

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain I

50S ribosomal protein L13