IL_5KPW_176
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPW_176 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0857
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5KPW|1|28|C|71
5KPW|1|28|G|72
5KPW|1|28|A|73
5KPW|1|28|U|74
5KPW|1|28|G|75
5KPW|1|28|G|76
5KPW|1|28|U|77
5KPW|1|28|A|78
5KPW|1|28|G|79
*
5KPW|1|28|C|97
5KPW|1|28|G|98
5KPW|1|28|A|99
5KPW|1|28|G|100
5KPW|1|28|A|101
5KPW|1|28|G|102
5KPW|1|28|U|103
5KPW|1|28|A|104
5KPW|1|28|G|105
Current chains
- Chain 28
- 5S ribosomal RNA
Nearby chains
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 50S ribosomal protein L16
- Chain U
- 50S ribosomal protein L25
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