IL_5KPX_012

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5KPX|1|26|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1645

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5KPX|1|26|G|147
5KPX|1|26|G|148
5KPX|1|26|A|149
5KPX|1|26|U|150
5KPX|1|26|A|151
5KPX|1|26|A|152
5KPX|1|26|C|153
*
5KPX|1|26|G|168
5KPX|1|26|C|169
5KPX|1|26|U|170
5KPX|1|26|A|171
5KPX|1|26|A|172
5KPX|1|26|U|173
5KPX|1|26|A|174
5KPX|1|26|C|175

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20