IL_5KPX_018

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_018 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1492

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

5KPX|1|26|A|371
5KPX|1|26|C|372
5KPX|1|26|A|373
5KPX|1|26|A|374
5KPX|1|26|U|375
*
5KPX|1|26|A|389
5KPX|1|26|U|390

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16