3D structure

PDB id
5KPX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5KPX_034 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.1193
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5KPX|1|26|A|673
5KPX|1|26|G|674
5KPX|1|26|A|675
5KPX|1|26|A|676
5KPX|1|26|U|677
5KPX|1|26|U|678
*
5KPX|1|26|A|712
5KPX|1|26|G|713
5KPX|1|26|G|714
5KPX|1|26|A|715
5KPX|1|26|A|716
5KPX|1|26|U|717

Current chains

Chain 26
16S ribosomal RNA

Nearby chains

Chain 10
30S ribosomal protein S6
Chain 15
30S ribosomal protein S11
Chain 22
30S ribosomal protein S18
Chain 25
30S ribosomal protein S21
Chain A
50S ribosomal protein L2

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