IL_5KPX_038

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1104

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5KPX|1|26|G|887
5KPX|1|26|G|888
5KPX|1|26|A|889
5KPX|1|26|G|890
5KPX|1|26|U|891
5KPX|1|26|A|892
5KPX|1|26|C|893
5KPX|1|26|G|894
*
5KPX|1|26|U|905
5KPX|1|26|A|906
5KPX|1|26|A|907
5KPX|1|26|A|908
5KPX|1|26|A|909
5KPX|1|26|C|910

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 27

Large subunit ribosomal RNA; LSU rRNA