IL_5KPX_082

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5KPX|1|27|G|801, 5KPX|1|27|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_082 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1209

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KPX|1|27|G|674
5KPX|1|27|A|675
5KPX|1|27|A|676
5KPX|1|27|A|677
5KPX|1|27|C|678
*
5KPX|1|27|G|799
5KPX|1|27|A|800
5KPX|1|27|G|801
5KPX|1|27|A|802
5KPX|1|27|U|803
5KPX|1|27|A|804
5KPX|1|27|G|805
5KPX|1|27|C|806

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15