IL_5KPX_088

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

5KPX|1|27|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_088 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.1681

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5KPX|1|27|A|844
5KPX|1|27|A|845
5KPX|1|27|U|846
5KPX|1|27|U|847
*
5KPX|1|27|A|933
5KPX|1|27|U|934

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L30