IL_5KPX_105

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5KPX|1|27|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_105 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.242

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5KPX|1|27|C|1043
5KPX|1|27|C|1044
5KPX|1|27|C|1045
5KPX|1|27|A|1046
5KPX|1|27|G|1047
5KPX|1|27|A|1048
5KPX|1|27|C|1049
5KPX|1|27|A|1050
5KPX|1|27|G|1051
*
5KPX|1|27|U|1108
5KPX|1|27|C|1109
5KPX|1|27|G|1110
5KPX|1|27|A|1111
5KPX|1|27|G|1112

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L10