IL_5KPX_119

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5KPX|1|27|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_119 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1134

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KPX|1|27|C|1437
5KPX|1|27|U|1438
5KPX|1|27|A|1439
5KPX|1|27|U|1440
*
5KPX|1|27|A|1551
5KPX|1|27|A|1552
5KPX|1|27|A|1553
5KPX|1|27|U|1554
5KPX|1|27|G|1555

Current chains

Chain 27

23S ribosomal RNA

Nearby chains