IL_5KPX_162

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_162 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1137

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5KPX|1|27|C|2636
5KPX|1|27|U|2637
5KPX|1|27|G|2638
5KPX|1|27|A|2639
5KPX|1|27|G|2640
*
5KPX|1|27|C|2774
5KPX|1|27|G|2775
5KPX|1|27|A|2776
5KPX|1|27|G|2777
5KPX|1|27|A|2778
5KPX|1|27|U|2779
5KPX|1|27|G|2780
5KPX|1|27|A|2781
5KPX|1|27|G|2782

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L13