IL_5KPX_182

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1116

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPX|1|27|U|1851
5KPX|1|27|U|1852
5KPX|1|27|A|1853
5KPX|1|27|A|1854
5KPX|1|27|U|1855
5KPX|1|27|U|1856
5KPX|1|27|G|1857
5KPX|1|27|A|1858
5KPX|1|27|U|1859
5KPX|1|27|G|1860
*
5KPX|1|27|U|1882
5KPX|1|27|U|1883
5KPX|1|27|G|1884
5KPX|1|27|A|1885
5KPX|1|27|U|1886
5KPX|1|27|C|1887
5KPX|1|27|G|1888
5KPX|1|27|A|1889
5KPX|1|27|A|1890
5KPX|1|27|G|1891

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA