IL_5L3P_037

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUGUGCUUAGAAGCGCCAUCAUUUAAAGAAA*UCACCA*C

Length

40 nucleotides

Bulged bases

5L3P|1|A|U|1066, 5L3P|1|A|A|1070

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5L3P|1|A|G|1055
5L3P|1|A|G|1056
5L3P|1|A|A|1057
5L3P|1|A|U|1058
5L3P|1|A|G|1059
5L3P|1|A|U|1060
5L3P|1|A|G|1063
5L3P|1|A|C|1064
5L3P|1|A|U|1065
5L3P|1|A|U|1066
5L3P|1|A|A|1067
5L3P|1|A|G|1068
5L3P|1|A|A|1069
5L3P|1|A|A|1070
5L3P|1|A|G|1071
5L3P|1|A|C|1072
5L3P|1|A|G|1074
5L3P|1|A|C|1075
5L3P|1|A|C|1076
5L3P|1|A|A|1077
5L3P|1|A|U|1078
5L3P|1|A|C|1079
5L3P|1|A|A|1080
5L3P|1|A|U|1081
5L3P|1|A|U|1082
5L3P|1|A|U|1083
5L3P|1|A|A|1084
5L3P|1|A|A|1085
5L3P|1|A|A|1086
5L3P|1|A|G|1087
5L3P|1|A|A|1088
5L3P|1|A|A|1089
5L3P|1|A|A|1090
*
5L3P|1|A|U|1101
5L3P|1|A|C|1102
5L3P|1|A|A|1103
5L3P|1|A|C|1104
5L3P|1|A|C|1102
5L3P|1|A|A|1103
*
5L3P|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain J

50S ribosomal protein L10

Chain K

50S ribosomal protein L11

Chain y

Transfer RNA; tRNA

Chain z

GTP pyrophosphokinase,GTP pyrophosphokinase,GTP pyrophosphokinase