IL_5L3P_202

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

5L3P|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_202 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.3276

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

5L3P|1|A|G|879
5L3P|1|A|G|880
5L3P|1|A|G|881
*
5L3P|1|A|U|895
5L3P|1|A|A|896
5L3P|1|A|C|897
5L3P|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain z

GTP pyrophosphokinase,GTP pyrophosphokinase,GTP pyrophosphokinase