3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCAC*GAGUGAAAUAGAAC
Length
18 nucleotides
Bulged bases
5LI0|1|A|U|549, 5LI0|1|A|A|553
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LI0_011 not in the Motif Atlas
Homologous match to IL_4WF9_015
Geometric discrepancy: 0.1519
The information below is about IL_4WF9_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

5LI0|1|A|G|527
5LI0|1|A|C|528
5LI0|1|A|A|529
5LI0|1|A|C|530
*
5LI0|1|A|G|541
5LI0|1|A|A|542
5LI0|1|A|G|543
5LI0|1|A|U|544
5LI0|1|A|G|545
5LI0|1|A|A|546
5LI0|1|A|A|547
5LI0|1|A|A|548
5LI0|1|A|U|549
5LI0|1|A|A|550
5LI0|1|A|G|551
5LI0|1|A|A|552
5LI0|1|A|A|553
5LI0|1|A|C|554

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain V
50S ribosomal protein L22
Chain X
50S ribosomal protein L24

Coloring options:


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