IL_5LI0_036
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5LI0|1|A|A|1171, 5LI0|1|A|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_036 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1519
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5LI0|1|A|G|1068
5LI0|1|A|G|1069
5LI0|1|A|A|1070
5LI0|1|A|A|1071
5LI0|1|A|A|1072
5LI0|1|A|A|1073
5LI0|1|A|G|1074
*
5LI0|1|A|C|1168
5LI0|1|A|G|1169
5LI0|1|A|A|1170
5LI0|1|A|A|1171
5LI0|1|A|A|1172
5LI0|1|A|A|1173
5LI0|1|A|U|1174
5LI0|1|A|G|1175
5LI0|1|A|U|1176
5LI0|1|A|A|1177
5LI0|1|A|C|1178
5LI0|1|A|C|1179
5LI0|1|A|G|1180
5LI0|1|A|G|1181
5LI0|1|A|G|1182
5LI0|1|A|G|1183
5LI0|1|A|C|1184
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain P
- 50S ribosomal protein L16
Coloring options: