IL_5LI0_039
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCCAGACAA*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5LI0|1|A|A|1090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_039 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.3111
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5LI0|1|A|C|1087
5LI0|1|A|C|1088
5LI0|1|A|C|1089
5LI0|1|A|A|1090
5LI0|1|A|G|1091
5LI0|1|A|A|1092
5LI0|1|A|C|1093
5LI0|1|A|A|1094
5LI0|1|A|A|1095
*
5LI0|1|A|U|1152
5LI0|1|A|C|1153
5LI0|1|A|G|1154
5LI0|1|A|A|1155
5LI0|1|A|G|1156
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L6
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