IL_5LI0_042

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

5LI0|1|A|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_042 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3549

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LI0|1|A|C|1235
5LI0|1|A|G|1236
5LI0|1|A|U|1237
5LI0|1|A|U|1238
*
5LI0|1|A|A|1284
5LI0|1|A|A|1285
5LI0|1|A|G|1286
5LI0|1|A|U|1287
5LI0|1|A|G|1288

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20