IL_5LI0_044

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5LI0|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1563

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5LI0|1|A|C|1246
5LI0|1|A|G|1247
5LI0|1|A|U|1248
5LI0|1|A|U|1249
5LI0|1|A|G|1250
5LI0|1|A|A|1251
5LI0|1|A|A|1252
5LI0|1|A|G|1253
*
5LI0|1|A|U|1272
5LI0|1|A|G|1273
5LI0|1|A|G|1274
5LI0|1|A|A|1275
5LI0|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20