IL_5LI0_052

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5LI0|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_052 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2576

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5LI0|1|A|C|1461
5LI0|1|A|G|1462
5LI0|1|A|A|1463
5LI0|1|A|U|1464
5LI0|1|A|G|1465
*
5LI0|1|A|C|1624
5LI0|1|A|U|1625
5LI0|1|A|A|1626
5LI0|1|A|G|1627

Current chains

Chain A

23S ribosomal RNA

Nearby chains