IL_5LI0_073

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5LI0|1|A|A|1965, 5LI0|1|A|U|1971, 5LI0|1|A|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_073 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|C|1961
5LI0|1|A|G|1962
5LI0|1|A|A|1963
5LI0|1|A|A|1964
5LI0|1|A|A|1965
5LI0|1|A|U|1966
5LI0|1|A|U|1967
5LI0|1|A|C|1968
5LI0|1|A|C|1969
5LI0|1|A|U|1970
5LI0|1|A|U|1971
5LI0|1|A|G|1972
*
5LI0|1|A|C|1988
5LI0|1|A|C|1989
5LI0|1|A|C|1990
5LI0|1|A|G|1991

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA