IL_5LI0_099

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5LI0|1|A|G|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_099 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.126

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|U|2663
5LI0|1|A|U|2664
5LI0|1|A|G|2665
5LI0|1|A|A|2666
5LI0|1|A|G|2667
*
5LI0|1|A|C|2801
5LI0|1|A|A|2802
5LI0|1|A|A|2803
5LI0|1|A|G|2804
5LI0|1|A|A|2805
5LI0|1|A|U|2806
5LI0|1|A|G|2807
5LI0|1|A|A|2808
5LI0|1|A|G|2809

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L13