IL_5LI0_104

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5LI0|1|A|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_104 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.1643

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5LI0|1|A|G|2764
5LI0|1|A|A|2765
5LI0|1|A|U|2766
5LI0|1|A|A|2767
5LI0|1|A|A|2768
5LI0|1|A|G|2769
*
5LI0|1|A|U|2789
5LI0|1|A|G|2790
5LI0|1|A|A|2791
5LI0|1|A|A|2792
5LI0|1|A|G|2793
5LI0|1|A|C|2794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L13