IL_5LI0_150

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_150 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1928

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

5LI0|1|a|G|963
5LI0|1|a|G|964
*
5LI0|1|a|C|1237
5LI0|1|a|A|1238
5LI0|1|a|C|1239

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19