IL_5LI0_174
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGA*UAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_174 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.193
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5LI0|1|a|U|1451
5LI0|1|a|G|1452
5LI0|1|a|G|1453
5LI0|1|a|A|1454
*
5LI0|1|a|U|1471
5LI0|1|a|A|1472
5LI0|1|a|G|1473
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
Coloring options: