IL_5LI0_174

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_174 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.193

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5LI0|1|a|U|1451
5LI0|1|a|G|1452
5LI0|1|a|G|1453
5LI0|1|a|A|1454
*
5LI0|1|a|U|1471
5LI0|1|a|A|1472
5LI0|1|a|G|1473

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain t

30S ribosomal protein S20