IL_5LI0_180

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGCG*CGAUUUG

Length

13 nucleotides

Bulged bases

5LI0|1|A|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_180 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.28

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|C|1794
5LI0|1|A|A|1795
5LI0|1|A|A|1796
5LI0|1|A|G|1797
5LI0|1|A|C|1798
5LI0|1|A|G|1799
*
5LI0|1|A|C|2006
5LI0|1|A|G|2007
5LI0|1|A|A|2008
5LI0|1|A|U|2009
5LI0|1|A|U|2010
5LI0|1|A|U|2011
5LI0|1|A|G|2012

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA