IL_5LJ3_007
3D structure
- PDB id
- 5LJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the core of the yeast spliceosome immediately after branching
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 5LJ3|1|V|A|79, 5LJ3|1|V|U|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LJ3_007 not in the Motif Atlas
- Geometric match to IL_7RQB_098
- Geometric discrepancy: 0.1781
- The information below is about IL_7RQB_098
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71530.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5LJ3|1|V|C|67
5LJ3|1|V|C|68
*
5LJ3|1|V|G|78
5LJ3|1|V|A|79
5LJ3|1|V|U|80
5LJ3|1|V|G|81
Current chains
- Chain V
- U6 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- Protein CWC16
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain I
- Intron of UBC4 pre-mRNA
- Chain K
- Pre-mRNA-processing protein 45
- Chain N
- Pre-mRNA-splicing factor SLT11
- Chain O
- CEF1
- Chain P
- CWC15
- Chain S
- CLF1
- Chain Z
- U2 splicesomal small nuclear RNA; U2 snRNA
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