IL_5LJ3_016
3D structure
- PDB id
- 5LJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the core of the yeast spliceosome immediately after branching
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGCGGAGG*CAUAGAAA
- Length
- 17 nucleotides
- Bulged bases
- 5LJ3|1|U|G|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LJ3|1|U|U|20
5LJ3|1|U|G|21
5LJ3|1|U|G|22
5LJ3|1|U|C|23
5LJ3|1|U|G|24
5LJ3|1|U|G|25
5LJ3|1|U|A|26
5LJ3|1|U|G|27
5LJ3|1|U|G|28
*
5LJ3|1|U|C|125
5LJ3|1|U|A|126
5LJ3|1|U|U|127
5LJ3|1|U|A|128
5LJ3|1|U|G|129
5LJ3|1|U|A|130
5LJ3|1|U|A|131
5LJ3|1|U|A|132
Current chains
- Chain U
- U5 snRNA (small nuclear RNA)
Nearby chains
- Chain L
- Pre-mRNA-splicing factor BUD31
- Chain b
- Small nuclear ribonucleoprotein-associated protein B
Coloring options: