IL_5LJ5_015
3D structure
- PDB id
- 5LJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Overall structure of the yeast spliceosome immediately after branching.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- AAC*GU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LJ5_015 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.1904
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5LJ5|1|I|A|69
5LJ5|1|I|A|70
5LJ5|1|I|C|71
*
5LJ5|1|Z|G|34
5LJ5|1|Z|U|35
Current chains
- Chain I
- Intron of UBC4 pre-mRNA
- Chain Z
- U2 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- Protein CWC16
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain F
- Pre-mRNA-splicing factor CWC25
- Chain G
- Pre-mRNA-splicing factor ISY1
- Chain V
- U6 spliceosomal RNA; U6 snRNA
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