IL_5LKS_017

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUCCG*CGGCC

Length

12 nucleotides

Bulged bases

5LKS|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_017 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3727

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5LKS|1|L5|G|481
5LKS|1|L5|G|482
5LKS|1|L5|G|483
5LKS|1|L5|U|484
5LKS|1|L5|C|485
5LKS|1|L5|C|486
5LKS|1|L5|G|487
*
5LKS|1|L5|C|669
5LKS|1|L5|G|670
5LKS|1|L5|G|671
5LKS|1|L5|C|672
5LKS|1|L5|C|673

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28