IL_5LKS_029

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAGG*CCGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_029 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3494

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5LKS|1|L5|C|1430
5LKS|1|L5|C|1431
5LKS|1|L5|G|1432
5LKS|1|L5|A|1433
5LKS|1|L5|G|1434
5LKS|1|L5|G|1435
*
5LKS|1|L5|C|1449
5LKS|1|L5|C|1450
5LKS|1|L5|G|1451
5LKS|1|L5|A|1452
5LKS|1|L5|G|1453
5LKS|1|L5|G|1454

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18