IL_5LKS_036

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_036 not in the Motif Atlas

Geometric match to IL_5TBW_031

Geometric discrepancy: 0.2077

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5LKS|1|L5|G|1586
5LKS|1|L5|G|1587
5LKS|1|L5|U|1588
5LKS|1|L5|C|1589
*
5LKS|1|L5|G|1605
5LKS|1|L5|U|1606
5LKS|1|L5|C|1607

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lj

60S ribosomal protein L37