3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGUUAAG*CCAUACC
Length
14 nucleotides
Bulged bases
5LKS|1|L5|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LKS|1|L5|G|1903
5LKS|1|L5|G|1904
5LKS|1|L5|U|1905
5LKS|1|L5|U|1906
5LKS|1|L5|A|1907
5LKS|1|L5|A|1908
5LKS|1|L5|G|1909
*
5LKS|1|L5|C|2067
5LKS|1|L5|C|2068
5LKS|1|L5|A|2069
5LKS|1|L5|U|2070
5LKS|1|L5|A|2071
5LKS|1|L5|C|2072
5LKS|1|L5|C|2073

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:

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