IL_5LKS_058

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_058 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1557

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5LKS|1|L5|G|2888
5LKS|1|L5|G|2889
5LKS|1|L5|C|2890
5LKS|1|L5|U|2891
*
5LKS|1|L5|A|3610
5LKS|1|L5|A|3611
5LKS|1|L5|C|3612
5LKS|1|L5|U|3613

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SI

40S ribosomal protein S8