IL_5LKS_065

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCGUCAU*GUGACGCG

Length

24 nucleotides

Bulged bases

5LKS|1|L5|A|3785, 5LKS|1|L5|C|3791, 5LKS|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|3781
5LKS|1|L5|C|3782
5LKS|1|L5|A|3783
5LKS|1|L5|A|3784
5LKS|1|L5|A|3785
5LKS|1|L5|U|3786
5LKS|1|L5|G|3787
5LKS|1|L5|C|3788
5LKS|1|L5|C|3789
5LKS|1|L5|U|3790
5LKS|1|L5|C|3791
5LKS|1|L5|G|3792
5LKS|1|L5|U|3793
5LKS|1|L5|C|3794
5LKS|1|L5|A|3795
5LKS|1|L5|U|3796
*
5LKS|1|L5|G|3804
5LKS|1|L5|U|3805
5LKS|1|L5|G|3806
5LKS|1|L5|A|3807
5LKS|1|L5|C|3808
5LKS|1|L5|G|3809
5LKS|1|L5|C|3810
5LKS|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA