IL_5LKS_082
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAUG*CAGGCG
- Length
- 11 nucleotides
- Bulged bases
- 5LKS|1|L5|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_082 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3699
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5LKS|1|L5|C|4582
5LKS|1|L5|C|4583
5LKS|1|L5|A|4584
5LKS|1|L5|U|4585
5LKS|1|L5|G|4586
*
5LKS|1|L5|C|4716
5LKS|1|L5|A|4717
5LKS|1|L5|G|4718
5LKS|1|L5|G|4719
5LKS|1|L5|C|4720
5LKS|1|L5|G|4721
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LO
- 60S ribosomal protein L13a
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