IL_5LKS_103
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUG*CGCC
- Length
- 9 nucleotides
- Bulged bases
- 5LKS|1|L7|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_103 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.3126
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5LKS|1|L7|G|81
5LKS|1|L7|G|82
5LKS|1|L7|A|83
5LKS|1|L7|U|84
5LKS|1|L7|G|85
*
5LKS|1|L7|C|92
5LKS|1|L7|G|93
5LKS|1|L7|C|94
5LKS|1|L7|C|95
Current chains
- Chain L7
- 5S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- 60S ribosomal protein L10-like
- Chain LS
- 60S ribosomal protein L18a
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