IL_5LKS_118

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAUCAA*UGACCACGG

Length

16 nucleotides

Bulged bases

5LKS|1|S2|U|361, 5LKS|1|S2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|S2|C|358
5LKS|1|S2|U|359
5LKS|1|S2|A|360
5LKS|1|S2|U|361
5LKS|1|S2|C|362
5LKS|1|S2|A|363
5LKS|1|S2|A|364
*
5LKS|1|S2|U|396
5LKS|1|S2|G|397
5LKS|1|S2|A|398
5LKS|1|S2|C|399
5LKS|1|S2|C|400
5LKS|1|S2|A|401
5LKS|1|S2|C|402
5LKS|1|S2|G|403
5LKS|1|S2|G|404

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23