IL_5LKS_125

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGGCAAGUCU*AGCU

Length

15 nucleotides

Bulged bases

5LKS|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|S2|A|599
5LKS|1|S2|G|600
5LKS|1|S2|G|601
5LKS|1|S2|G|602
5LKS|1|S2|C|603
5LKS|1|S2|A|604
5LKS|1|S2|A|605
5LKS|1|S2|G|606
5LKS|1|S2|U|607
5LKS|1|S2|C|608
5LKS|1|S2|U|609
*
5LKS|1|S2|A|634
5LKS|1|S2|G|635
5LKS|1|S2|C|636
5LKS|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain Se

Ribosomal protein S30