3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGGAC*GUUUUC
Length
11 nucleotides
Bulged bases
5LKS|1|S2|U|1016
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LKS_131 not in the Motif Atlas
Geometric match to IL_6CZR_167
Geometric discrepancy: 0.2282
The information below is about IL_6CZR_167
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
18

Unit IDs

5LKS|1|S2|G|923
5LKS|1|S2|G|924
5LKS|1|S2|G|925
5LKS|1|S2|A|926
5LKS|1|S2|C|927
*
5LKS|1|S2|G|1014
5LKS|1|S2|U|1015
5LKS|1|S2|U|1016
5LKS|1|S2|U|1017
5LKS|1|S2|U|1018
5LKS|1|S2|C|1019

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain Sb
40S ribosomal protein S27

Coloring options:


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