IL_5LKS_152

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUACG*CGCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_152 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.362

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5LKS|1|S2|C|1559
5LKS|1|S2|U|1560
5LKS|1|S2|A|1561
5LKS|1|S2|C|1562
5LKS|1|S2|G|1563
*
5LKS|1|S2|C|1572
5LKS|1|S2|G|1573
5LKS|1|S2|C|1574
5LKS|1|S2|G|1575
5LKS|1|S2|G|1576

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain ST

40S ribosomal protein S19