IL_5LKS_173

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCGGAGGAUUCAACC*GGCGCAUUUCCACCGCGGC

Length

36 nucleotides

Bulged bases

5LKS|1|L5|C|460, 5LKS|1|L5|C|685, 5LKS|1|L5|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|457
5LKS|1|L5|C|458
5LKS|1|L5|C|459
5LKS|1|L5|C|460
5LKS|1|L5|G|461
5LKS|1|L5|G|462
5LKS|1|L5|A|463
5LKS|1|L5|G|464
5LKS|1|L5|G|465
5LKS|1|L5|A|466
5LKS|1|L5|U|467
5LKS|1|L5|U|468
5LKS|1|L5|C|469
5LKS|1|L5|A|470
5LKS|1|L5|A|471
5LKS|1|L5|C|472
5LKS|1|L5|C|473
*
5LKS|1|L5|G|681
5LKS|1|L5|G|682
5LKS|1|L5|C|683
5LKS|1|L5|G|684
5LKS|1|L5|C|685
5LKS|1|L5|A|686
5LKS|1|L5|U|687
5LKS|1|L5|U|688
5LKS|1|L5|U|689
5LKS|1|L5|C|690
5LKS|1|L5|C|691
5LKS|1|L5|A|692
5LKS|1|L5|C|693
5LKS|1|L5|C|694
5LKS|1|L5|G|695
5LKS|1|L5|C|696
5LKS|1|L5|G|697
5LKS|1|L5|G|698
5LKS|1|L5|C|699

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28