IL_5LKS_177

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGCUGGGAAGGCC*GCAGCAGCACUCGCCG

Length

30 nucleotides

Bulged bases

5LKS|1|L5|U|728, 5LKS|1|L5|G|729, 5LKS|1|L5|C|934, 5LKS|1|L5|A|935, 5LKS|1|L5|C|936, 5LKS|1|L5|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|724
5LKS|1|L5|G|725
5LKS|1|L5|G|726
5LKS|1|L5|C|727
5LKS|1|L5|U|728
5LKS|1|L5|G|729
5LKS|1|L5|G|730
5LKS|1|L5|G|731
5LKS|1|L5|A|732
5LKS|1|L5|A|733
5LKS|1|L5|G|734
5LKS|1|L5|G|735
5LKS|1|L5|C|736
5LKS|1|L5|C|737
*
5LKS|1|L5|G|927
5LKS|1|L5|C|928
5LKS|1|L5|A|929
5LKS|1|L5|G|930
5LKS|1|L5|C|931
5LKS|1|L5|A|932
5LKS|1|L5|G|933
5LKS|1|L5|C|934
5LKS|1|L5|A|935
5LKS|1|L5|C|936
5LKS|1|L5|U|937
5LKS|1|L5|C|938
5LKS|1|L5|G|939
5LKS|1|L5|C|940
5LKS|1|L5|C|941
5LKS|1|L5|G|942

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a