IL_5LKS_192

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGCCUUGAAGCCU*GGGUGGAGCCG

Length

26 nucleotides

Bulged bases

5LKS|1|L5|A|2300, 5LKS|1|L5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|U|2298
5LKS|1|L5|G|2299
5LKS|1|L5|A|2300
5LKS|1|L5|G|2301
5LKS|1|L5|C|2302
5LKS|1|L5|C|2303
5LKS|1|L5|U|2304
5LKS|1|L5|U|2305
5LKS|1|L5|G|2306
5LKS|1|L5|A|2307
5LKS|1|L5|A|2308
5LKS|1|L5|G|2309
5LKS|1|L5|C|2310
5LKS|1|L5|C|2311
5LKS|1|L5|U|2312
*
5LKS|1|L5|G|2326
5LKS|1|L5|G|2327
5LKS|1|L5|G|2328
5LKS|1|L5|U|2329
5LKS|1|L5|G|2330
5LKS|1|L5|G|2331
5LKS|1|L5|A|2332
5LKS|1|L5|G|2333
5LKS|1|L5|C|2334
5LKS|1|L5|C|2335
5LKS|1|L5|G|2336

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28