IL_5LKS_194

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGACCGAUCC*GGGGAGAGGGUGUAAAUCUC

Length

66 nucleotides

Bulged bases

5LKS|1|L5|C|2563, 5LKS|1|L5|U|2575, 5LKS|1|L5|C|2768, 5LKS|1|L5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|2549
5LKS|1|L5|G|2550
5LKS|1|L5|A|2551
5LKS|1|L5|G|2552
5LKS|1|L5|A|2553
5LKS|1|L5|U|2554
5LKS|1|L5|G|2555
5LKS|1|L5|G|2556
5LKS|1|L5|G|2557
5LKS|1|L5|C|2558
5LKS|1|L5|G|2559
5LKS|1|L5|C|2560
5LKS|1|L5|C|2561
5LKS|1|L5|G|2562
5LKS|1|L5|C|2563
5LKS|1|L5|G|2564
5LKS|1|L5|A|2565
5LKS|1|L5|G|2566
5LKS|1|L5|G|2567
5LKS|1|L5|C|2568
5LKS|1|L5|G|2569
5LKS|1|L5|U|2570
5LKS|1|L5|C|2571
5LKS|1|L5|C|2572
5LKS|1|L5|A|2573
5LKS|1|L5|G|2574
5LKS|1|L5|U|2575
5LKS|1|L5|G|2576
5LKS|1|L5|C|2577
5LKS|1|L5|G|2578
5LKS|1|L5|G|2579
5LKS|1|L5|U|2580
5LKS|1|L5|A|2581
5LKS|1|L5|A|2582
5LKS|1|L5|C|2583
5LKS|1|L5|G|2584
5LKS|1|L5|C|2585
5LKS|1|L5|G|2586
5LKS|1|L5|A|2587
5LKS|1|L5|C|2588
5LKS|1|L5|C|2589
5LKS|1|L5|G|2590
5LKS|1|L5|A|2591
5LKS|1|L5|U|2592
5LKS|1|L5|C|2593
5LKS|1|L5|C|2594
*
5LKS|1|L5|G|2751
5LKS|1|L5|G|2752
5LKS|1|L5|G|2753
5LKS|1|L5|G|2754
5LKS|1|L5|A|2755
5LKS|1|L5|G|2756
5LKS|1|L5|A|2757
5LKS|1|L5|G|2758
5LKS|1|L5|G|2759
5LKS|1|L5|G|2760
5LKS|1|L5|U|2761
5LKS|1|L5|G|2762
5LKS|1|L5|U|2763
5LKS|1|L5|A|2764
5LKS|1|L5|A|2765
5LKS|1|L5|A|2766
5LKS|1|L5|U|2767
5LKS|1|L5|C|2768
5LKS|1|L5|U|2769
5LKS|1|L5|C|2770

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34