IL_5LKS_203

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAUGUCAAAGU*AAUGAAGCGCG

Length

25 nucleotides

Bulged bases

5LKS|1|L5|U|3709, 5LKS|1|L5|A|3711, 5LKS|1|L5|A|3712, 5LKS|1|L5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|3708
5LKS|1|L5|U|3709
5LKS|1|L5|G|3710
5LKS|1|L5|A|3711
5LKS|1|L5|A|3712
5LKS|1|L5|U|3713
5LKS|1|L5|G|3714
5LKS|1|L5|U|3715
5LKS|1|L5|C|3716
5LKS|1|L5|A|3717
5LKS|1|L5|A|3718
5LKS|1|L5|A|3719
5LKS|1|L5|G|3720
5LKS|1|L5|U|3721
*
5LKS|1|L5|A|3732
5LKS|1|L5|A|3733
5LKS|1|L5|U|3734
5LKS|1|L5|G|3735
5LKS|1|L5|A|3736
5LKS|1|L5|A|3737
5LKS|1|L5|G|3738
5LKS|1|L5|C|3739
5LKS|1|L5|G|3740
5LKS|1|L5|C|3741
5LKS|1|L5|G|3742

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S2

Small subunit ribosomal RNA; SSU rRNA