IL_5LKS_214

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

5LKS|1|L5|C|4756, 5LKS|1|L5|C|4757, 5LKS|1|L5|U|4763, 5LKS|1|L5|C|4871, 5LKS|1|L5|G|4872, 5LKS|1|L5|A|4874, 5LKS|1|L5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|4755
5LKS|1|L5|C|4756
5LKS|1|L5|C|4757
5LKS|1|L5|U|4758
5LKS|1|L5|C|4759
5LKS|1|L5|G|4760
5LKS|1|L5|G|4761
5LKS|1|L5|A|4762
5LKS|1|L5|U|4763
5LKS|1|L5|A|4764
5LKS|1|L5|G|4765
*
5LKS|1|L5|U|4869
5LKS|1|L5|G|4870
5LKS|1|L5|C|4871
5LKS|1|L5|G|4872
5LKS|1|L5|G|4873
5LKS|1|L5|A|4874
5LKS|1|L5|G|4875
5LKS|1|L5|U|4876
5LKS|1|L5|G|4877
5LKS|1|L5|C|4878

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a