IL_5LKS_242
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUC*GAGCG
- Length
- 9 nucleotides
- Bulged bases
- 5LKS|1|L8|C|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_242 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3472
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5LKS|1|L5|C|6
5LKS|1|L5|C|7
5LKS|1|L5|U|8
5LKS|1|L5|C|9
*
5LKS|1|L8|G|147
5LKS|1|L8|A|148
5LKS|1|L8|G|149
5LKS|1|L8|C|150
5LKS|1|L8|G|151
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
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