3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCGGCGCCGCUCGUGGGG*CCCGGCGCGCCGG
Length
31 nucleotides
Bulged bases
5LKS|1|L5|C|183, 5LKS|1|L5|C|185, 5LKS|1|L5|G|186, 5LKS|1|L5|U|187
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LKS|1|L5|C|174
5LKS|1|L5|C|175
5LKS|1|L5|G|176
5LKS|1|L5|G|177
5LKS|1|L5|C|178
5LKS|1|L5|G|179
5LKS|1|L5|C|180
5LKS|1|L5|C|181
5LKS|1|L5|G|182
5LKS|1|L5|C|183
5LKS|1|L5|U|184
5LKS|1|L5|C|185
5LKS|1|L5|G|186
5LKS|1|L5|U|187
5LKS|1|L5|G|188
5LKS|1|L5|G|189
5LKS|1|L5|G|190
5LKS|1|L5|G|191
*
5LKS|1|L5|C|250
5LKS|1|L5|C|251
5LKS|1|L5|C|252
5LKS|1|L5|G|253
5LKS|1|L5|G|254
5LKS|1|L5|C|255
5LKS|1|L5|G|256
5LKS|1|L5|C|257
5LKS|1|L5|G|258
5LKS|1|L5|C|259
5LKS|1|L5|C|260
5LKS|1|L5|G|261
5LKS|1|L5|G|262

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LL
60S ribosomal protein L13
Chain LY
60S ribosomal protein L26
Chain Lh
60S ribosomal protein L35
Chain Lj
60S ribosomal protein L37

Coloring options:

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